Komparasi Algoritma Machine Learning untuk Prediksi Risiko Stunting Berbasis Data P3KE Provinsi Gorontalo
Keywords:
Machine Learning, Prediksi Stunting, XGBoost, SHAP, Data P3KE, SMOTE, GorontaloAbstract
Stunting merupakan permasalahan kesehatan masyarakat yang serius di Provinsi Gorontalo dengan prevalensi mencapai 23,8% pada tahun 2024, masih jauh di atas target nasional sebesar 14%. Penelitian ini bertujuan mengembangkan model prediksi risiko Stunting menggunakan pendekatan Machine learning berbasis Data Pensasaran Percepatan Penghapusan Kemiskinan Ekstrem (P3KE). Dataset yang digunakan mencakup 87.902 rumah tangga di Provinsi Gorontalo. Lima algoritma dibandingkan, yaitu Decision Tree, K-Nearest Neighbors, Support Vector Machine, Random Forest, dan XGBoost. Evaluasi dilakukan pada dua skenario, yaitu tanpa dan dengan penerapan Synthetic Minority Oversampling Technique (SMOTE). Optimasi hyperparameter dilakukan menggunakan RandomizedSearchCV dengan 3-fold cross-validation. Hasil eksperimen menunjukkan bahwa XGBoost tanpa SMOTE merupakan model terbaik dengan F1-score sebesar 90,39%, accuracy 90,48%, precision 99,91%, recall 82,52%, dan AUC-ROC 94,09%. Penerapan SMOTE tidak memberikan peningkatan kinerja yang signifikan, dengan selisih F1-score yang hanya mencapai 0,0067 poin. Sebaliknya, teknik tersebut meningkatkan waktu komputasi hingga 65%. Temuan ini mengonfirmasi bahwa distribusi kelas yang relatif seimbang, yaitu 54,2% : 45,8%, tidak memerlukan proses oversampling. Analisis SHAP mengidentifikasi BAB: Milik sendiri dan Indeks Sanitasi sebagai fitur yang paling berpengaruh dalam prediksi risiko Stunting. Hasil penelitian menunjukkan bahwa data registrasi sosial P3KE tanpa melibatkan data antropometri tetap mampu menghasilkan model prediksi risiko Stunting dengan kinerja yang kompetitif, yang ditunjukkan oleh nilai F1-score di atas 90%.
References
[1] N. Sari and J. Christy, “Factors Influencing Stunting among Children Aged 0–59 Months,” Indonesian Journal of Global Health Research, vol. 7, no. 4, pp. 981–988, Aug. 2025, doi: 10.37287/ijghr.v7i4.6572.
[2] Sideropoulos V, Draper A, A. L. Munoz-Chereau B, and Dockrell JE, “Childhood stunting and cognitive development: a meta-analysis.,” J Glob Health, Sep. 2025, doi: https://doi.org/10.7189/jogh.15.04257.
[3] World Health Organization, “Joint Child Malnutrition Estimates,” https://www.who.int/data/gho/data/themes/topics/joint-child-malnutrition-estimates-unicef-who-wb.
[4] drg Widyawati, “Penurunan Prevalensi Stunting tahun 2021 sebagai Model Menuju Generasi Emas Indoensia 2045,” Kementerian Kesehatan Republik Indoensia. Accessed: May 17, 2026. [Online]. Available: https://kemkes.go.id/id/penurunan-prevalensi-stunting-tahun-2021-sebagai-modal-menuju-generasi-emas-indonesia-2045
[5] L. S. Situmorang, “Implementasi Peraturan Presiden Nomor 72 Tahun 2021 tentang Percepatan Penurunan Stunting (Studi Kasus di Kelurahan Sicanang Kecamatan Medan Belawan),” Universitas Mdedan Area, Medan, 2023. Accessed: May 17, 2026. [Online]. Available: https://repositori.uma.ac.id/jspui/handle/123456789/21089
[6] M. Butarbutar, D. Pratiwi Munthe, A. Pramesti Ningsih, B. Sri Rezeki Panjaitan, P. Ilmu Kesehatan Masyarakat, and A. Penelitian, “Gambaran Kejadian Stunting Pada Balita Di Puskesmas Matani Kota Tomohon Overview of Stunting Incidents in Toddlers at the Matani Community Health Center, Tomohon City,” Jurnal Kolaboratif Sains, vol. 8, no. 12, pp. 8497–8502, 2025, doi: 10.56338/jks.v8i12.9706.
[7] Y. Monoarfa, “Prevalensi Stunting di Gorontalo masih di Atas Nasional, Namun Alami Penurunan Signifikan,” Dinas Kesehatan Provinsi Gorontalo. Accessed: May 17, 2026. [Online]. Available: https://dinkes.gorontaloprov.go.id/prevalensi-stunting-di-gorontalo-masih-di-atas-angka-nasional-namun-alami-penurunan-signifikan/
[8] N. Pembengo, “300 Dokter Anggota IDI Gorontalo Menjadi Orang Tua Asuh Keluarga Berisiko Stunting,” Dinas Kesehatan Provinsi Gorontalo. Accessed: May 17, 2026. [Online]. Available: https://dinkes.gorontaloprov.go.id/300-dokter-anggota-idi-gorontalo-menjadi-orang-tua-asuh-keluarga-berisiko-stunting/
[9] Z. Mile and I. Mohamad, “Tekan Angka Stunting 28,2 Persen, Wabup Tonny Junus Luncurkan Gerakan Orang Tua Asuh ‘GENTING,’” Pemerintah Kabupaten Gorontalo. Accessed: May 17, 2026. [Online]. Available: https://gorontalokab.go.id/berita/963/tekan-angka-stunting-28-2-persen-wabup-tonny-junus-luncurkan-gerakan-orang-tua-asuh-genting
[10] R. Rahutomo, G. N. Elwirehardja, M. Isnan, F. Asadi, and B. Pardamean, “Machine Learning Implementations in Childhood Stunting Research: A Systematic Literature Review,” in 2023 International Conference on Information Management and Technology (ICIMTech), 2023, pp. 229–234. doi: 10.1109/ICIMTech59029.2023.10277881.
[11] Emilda Indrisari, Hidayat Febiansyah, and Bambang Adiwinoto, “A Systematic Literature Review on the Application of Machine Learning for Predicting Stunting Prevalence in Indonesia (2020–2024),” Journal SISFOKOM, vol. 14, pp. 277–283, Jul. 2025, doi: https://doi.org/10.32736/sisfokom.v14i3.2366.
[12] Ndagijimana S, Kabano IH, Masabo E, and Ntaganda JM, “Prediction of Stunting Among Under-5 Children in Rwanda Using Machine Learning Techniques.,” J Prev Med Public Health, pp. 41–49, Jan. 2023, doi: 10.3961/jpmph.22.388.
[13] O. N. Chilyabanyama et al., “Performance of Machine Learning Classifiers in Classifying Stunting among Under-Five Children in Zambia,” Children, vol. 9, no. 7, 2022, doi: 10.3390/children9071082.
[14] T. Sugihartono, B. Wijaya, Marini, A. F. Alkayes, and H. A. Anugrah, “Optimizing Stunting Detection through SMOTE and Machine Learning: a Comparative Study of XGBoost, Random Forest, SVM, and k-NN,” Journal of Applied Data Sciences, vol. 6, no. 1, pp. 667–682, Jan. 2025, doi: 10.47738/jads.v6i1.494.
[15] Halid Worku Jemil, Sonia Worku Semayneh, Altaseb Beyene Kassaw, and Kassahun Dessie Gashu, “Predicting severe stunting and its determinants among under-five in Eastern African Countries: A machine learning algorithms,” PLoS One, vol. 21, no. 1, pp. 1–21, May 2026, doi: 10.1371/journal.pone.0340221.
[16] M. K. Ayele, G. A. Baye, S. H. Yesuf, A. A. Engda, and E. T. Mitiku, “Predicting stunting status among under five children in ethiopia using ensemblemachine learning algorithms,” Sci. Rep., vol. 15, no. 1, p. 27907, 2025, doi: 10.1038/s41598-025-03206-1.
[17] P. K. Arya, K. Sur, T. Kundu, S. Dhote, and S. K. Singh, “Unveiling predictive factors for household-level stunting in India: A machine learning approach using NFHS-5 and satellite-driven data,” Nutrition, vol. 132, p. 112674, 2025, doi: https://doi.org/10.1016/j.nut.2024.112674.
[18] N. Hasdyna, R. K. Dinata, Rahmi, and T. I. Fajri, “Hybrid Machine Learning for Stunting Prevalence: A Novel Comprehensive Approach to Its Classification, Prediction, and Clustering Optimization in Aceh, Indonesia,” Informatics, vol. 11, no. 4, 2024, doi: 10.3390/informatics11040089.
[19] N. Novalina, I. A. A. Tarigan, F. K. Kameela, and M. Rizkinia, “Benchmarking machine learning algorithm for stunting risk prediction in Indonesia,” Bulletin of Electrical Engineering and Informatics, vol. 14, no. 3, pp. 2252–2263, Jun. 2025, doi: 10.11591/eei.v14i3.8997.
[20] A. Wicaksono, D. Prasetyo, Y. Mar’atullatifah, D. U. Iswavigra, H. Mahmudah, and A. Hapsari, “Data Analysis and Explainable Machine Learning for Stunting Prediction,” 2025.
[21] M. M. Islam et al., “Application of machine learning based algorithm for prediction of malnutrition among women in Bangladesh,” International Journal of Cognitive Computing in Engineering, vol. 3, no. February, pp. 46–57, 2022, doi: 10.1016/j.ijcce.2022.02.002.
[22] M. As’an Hamid and R. Subhiyakto, “Performance Comparison of Random Forest, SVM, and XGBoost Algorithms with SMOTE for Stunting Prediction,” 2025. [Online]. Available: http://jurnal.polibatam.ac.id/index.php/JAIC
[23] V. R. Saragih, A. Arnita, Z. Indra, I. Taufik, and M. S. Sinaga, “Comparison of supervised machine learning methods in predicting the prevalence of stunting in north sumatra province,” Journal of Soft Computing Exploration, vol. 5, no. 4, pp. 370–379, Dec. 2024, doi: 10.52465/joscex.v5i4.498.
[24] Moh. A. E. Pratama, S. Hendra, H. R. Ngemba, R. Nur, R. Azhar, and R. Laila, “Comparison of Machine Learning Algorithms for Predicting Stunting Prevalence in Indonesia,” Jurnal Sisfokom (Sistem Informasi dan Komputer), vol. 13, no. 2, pp. 200–209, Jun. 2024, doi: 10.32736/sisfokom.v13i2.2097.
[25] M. Handayani and M. F. L. Sibuea, “Performance Analysis of Clustering Models Based on Machine Learning in Stunting Data Mapping,” JURTEKSI (Jurnal Teknologi dan Sistem Informasi), vol. 9, no. 4, pp. 715–720, Sep. 2023, doi: 10.33330/jurteksi.v9i4.2770.
[26] J. Joharini and A. Subekti, “A Comparative Methodological Study of Automated Machine Learning for Multiclass Stunting Prediction Using Anthropometric Data,” sinkron, vol. 10, no. 2, pp. 991–1002, Apr. 2026, doi: 10.33395/sinkron.v10i2.15886.
[27] S. Syahrial, R. Ilham, Z. F. Asikin, and St. S. I. Nurdin, “Stunting Classification in Children’s Measurement Data Using Machine Learning Models,” Journal La Multiapp, vol. 3, no. 2, pp. 52–60, Mar. 2022, doi: 10.37899/journallamultiapp.v3i2.614.
[28] M. Yunus, M. K. Biddinika, and A. Fadlil, “Comparison of Machine Learning Algorithms for Stunting Classification,” Scientific Journal of Engineering Research, vol. 1, no. 2, pp. 64–70, Apr. 2025, doi: 10.64539/sjer.v1i2.2025.9.
[29] M. Ibnu Choldun Rachmatullah and S. Armiati, “Menerapkan SMOTE Pada Klasifikasi Data Penyakit Stroke,” Improve Jurnal Ilmiah Manajemen Informatika, vol. 17, no. 1, pp. 9–12, Apr. 2025, Accessed: May 17, 2026. [Online]. Available: Menerapkan SMOTE Pada Klasifikasi Data Penyakit Stroke
[30] S. A. Utiarahman, A. Mulawati, and M. Pratama, “KLIK: Kajian Ilmiah Informatika dan Komputer Analisis Perbandingan KNN, SVM, Decision Tree dan Regresi Logistik Untuk Klasifikasi Obesitas Multi Kelas,” Media Online), vol. 4, no. 6, pp. 3137–3146, 2024, doi: 10.30865/klik.v4i6.1871.
[31] H. Joe and H.-G. Kim, “Multi-label classification with XGBoost for metabolic pathway prediction,” BMC Bioinformatics, vol. 25, no. 1, p. 52, 2024, doi: 10.1186/s12859-024-05666-0.
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